#NEXUS 

Begin data;
	Dimensions ntax=107 nchar=569; [note BJLK1 is 4 sequences the same, and both Ongael sequences are two, therefore total number of sequences is 112]
	Format datatype=nucleotide gap=-;
	Matrix
[letters, and _# numbers refer to multiple clones picked from same PCR_individuals]
            [        10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       5><       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820        830      840       850       860       870       880        ] 
            [.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.........-.]
Limbata      ????????????????????????????????????????????????????????????????????????????????????????????????????????TTG--ATTCTCTTCTGAA-TCGA---------------------------------------------------------CCACTTTTATT-----CTGTTGAGCGAGTGCTTGCC----------------------------------------------ATTCGACAACGAAA---GAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCT----GTTG-----T---------GTAACTAC--TTG-ATAAAAACTTTTTTCC----ATTAATG----------GT-TAAACGTTTTTTAA---------ACGTTTGGC-TC-------AATTAC-AAAAATTAGATACAA
Sooke1a      ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACATACATACATACA--ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
Sooke1B      ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACATACATACATACA--ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
Kachemak1    ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CTATGC-GC---------------------ACATATACATACATACATACATACA--------------ACTGTTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
Kachemak2    ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????C---------------------ACATATACATACATACATACATACA--------------ACTGcTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA                          
Kachemak3    ???????????????????????????????????????????????????????????????????????????????????????????????????????GTTGn-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACA--------------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCGTA----------AT-CGAACCTTTTTT--ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
Kachemak4    ??TACCGA--ATGATGTCaTGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACATACATACA------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
Sooke2A      ATTACCGA--ATGATGTCATGTCATGTCATGTCATGT------------------------------------------------------------------GTTGT-GTCATGTTCTAAGC-GC---------------------ACATATACATACATACATACATACATACA----------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTC-ATTAA---AAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
Sooke2b      ATTACCGA--ATGATGTCATGTCATGTCATGTCATGT------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACATACA----------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
Oregon1B     ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACATACA----------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
Oregon1C     ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACA--------------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
aNewportBa   ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACATACA----------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTTTATCAAGAAAAAGTTTCGT-TA-------AGTTAC-AAAAATGAGATACAA
bNewportBa   ?????CGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACATACA----------NCTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
cNewportBa   ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACA--------------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
TomalesBay   ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACATACA----------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGAT-CAA
aMontereyB   ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACA--------------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
bMontereyB   ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACA------------------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAGCC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATTAA---AAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
cMontereyB   ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACA------------------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATTAA---AAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
dMontereyB   ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACATACATACATACA------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
eMontereyB   ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTGTGC-GC---------------------ACATATACATACATACATACATACATACATACA------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
fMontereyB   ATTACCGA--ATGATGTCATGTCATGTCATGT-----------------------------------------------------------------------GTTGT-GTCATGTTCTATGC-GC---------------------ACATATACATACATACATACA------------------ACTGCTATT-----CTGTTGT------------------------------------------------------------TTCGACAAC-----ACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGG------GTGCACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTAT-GTTT-----TCTT-----CAAAACTAC--CTGTT------TTA-TTCCT----GATCATA----------AT-CGAACCTTTTTTT-ATCAAGAAAAAGTTTGGT-TA-------AGTTAC-AAAAATGAGATACAA
aNewportBe   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AAAGCTATTCTATTCTGTTGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAAAGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTT-C---------ATTGT-------TAATAAC--TTGTGTAAAAATTAATTCCT----GAAAATG----------AT-CAAAC-TTTTTTG------------GTTTGGC-TA-------AGTTGC-AAAAATGAGATACAA
aSanDiego1   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA-----------------------------------------------------------AAGCTATTCTATTCTGTTGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAAAGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTTTC---------ATTGT-------TAATAAC--TTGTGTAAAAATTA-TTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTGGC-TA-------AGTTGC-AAAAATGAGATACAA
MarinaDelR   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TAT??TGCAA----------------------------------------------------------AAAGCTATTCTAT?CTGTTGAGCGGATCTGTG----------------------------------------------TCATTCGACAACGAATAAAGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTT-C---------ATTGT-------TAATAAC--TTGTGTAAAAATTAATTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
bNewportBc   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AAAGCTATTCTATTCTGTTGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAAAGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTT-C---------ATTGT-------TAATAAC--TTGTGTAAAAATTAATTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
cNewportBe   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AAAGCTATTCTATTCTGTTGAGCGGATGCTTA----------------------------------------------TCATTCGACAACGAATAAAGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTT-C---------ATTGT-------TAATAAC--TTGTGTAAAAATTAATTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
dNewportBe   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AAAGCTATTCTATTCTGTTGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAAAGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTT-C---------ATTGT-------TAATAAC--TTGTGTAAAAATTAATTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
bSanDiego1   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AA-GCTATTCTATTCTGTTGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAAAGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTTTC---------ATTGT-------TAATAAC--TTGTGTAAAAATTA-TTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
cSanDiego2   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AAAGCTATTCTATTCTGTTGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTT-C---------ATTGT-------TAATAAC--TTGTGTAAAAATTAATTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
dSanDiego3   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AAAGCTATTCTATTCTGTTGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAAAGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTT-C---------ATTGT-------TAATAAC--TTGTGTAAAAATTAATTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
eSanDiego3   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AAAGCTATTCTATTCTGTTGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAAAGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTTTC---------ATTGT-------TAATAAC--TTGTGTAAAAATTA-TTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
fSanDiego4   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AAAGCTATTCTATTCTGTTGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTT-C---------ATTGT-------TAATAAC--TTGTGTAAAAATTAATTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
gSanDiego4   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AAAGCTATTCTATTCTGTTGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAACGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTT-C---------ATTGT-------TAATAAC--TTGTGTAAAAATTAATTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
TokyoBaya_   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AAAGCTATTCTATTCTGTTGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAAAGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTT-C---------ATTGT-------TAATAAC--TTGTGTAAAAATTAATTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
TokyoBayb_   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AAAGCTATTCTATTCTGTCGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAAAGAATAACC--------ACTGTGAACTTATACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTT-C---------ATTGT-------TAATAAC--TTGTGTAAAAATTAATTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
TokyoBayc_   ATTACCGA-AAC--------------------------------------------------------------------------------------------TTGC-----AGTT-TATGCTGCAA----------------------------------------------------------AAAGCTATTCTATTCTGTCGAGCGGATGCTTG----------------------------------------------TCATTCGACAACGAATAAAGAATAACC--------ACTGTGAACTTGTACCTATCTGTGTGAGGTGGGCAGA------GTGCACAT-------GCGTGT--GTACGTCTGAGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTTTTT-C---------ATTGT-------TAATAAC--TTGTGTAAAAATTAATTCCT----GAAAATG----------GT-CAAAC-TTTTTTG------------GTTTG-GCTA-------AGTTGC-AAAAATGAGATACAA
BJLK5B       ATTACCGT--AC-----------------------------------------------------------------------CGTACTGTAT-----------------------------------------CGTA-CT-GCT-----------------------------------------GCTGCTATT-----CTGTTGAGCGACTGATTCC------------------------------------------ACATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACCTGTACCCATCTGTGTGAGGTGTGCAGA------GTGCACACGAGTAGCTAGTGT--GTACGTCTGCCCTTAAATGACCGGCGTTTT-------CCAGTCGGCCTCACATGGAGTCTGCTC-TTGTTGCAAATTTCT-CTCTCGAAATGAC-CTGATTC-----TTA-TTCCT----GATCTTGA----TAGATAT-CAAGTGCGGTCGAGC----------ATTTGATGTT---GAGTTGCGAAGAGAATTTAGACACAA
3JLO31AB     ATTACCGT--AC-----------------------------------------------------------------------CGTACTGTAT-----------------------------------------CGTA-CT-GCT-----------------------------------------GCTGCTATT-----CTGTTGAGCGACTGATTCC------------------------------------------ACATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACCTGTACCCATCTGTGTGAGGTGTGCAGA------GTGCACACGAGTAGCTAGTGT--GTACGTCTGCCCTTAAATGACTGGCGTTTT-------CCAGTCGGCCTCACATGGAGTCTGCTC-TTGTTGCAAATTTCT-CTCTCGAAATGAC-CTGATTC-----TTA-TTCCT----GATCTTGA----TAGATAT-CAAGTGCGGTCGAGC----------ATTTGATGTT---GAGTTGCGAAGAGAATTTAGATACAA
OTM1a_Palau  ATTACCGT--AC-----------------------------------------------------------------------CGTACTGTAT-----------------------------------------CGTA-CT-GCT-----------------------------------------GCTGCTATT-----CTGTTGAGCGACTGATTCC------------------------------------------ACATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACCTGTACCCATCTGTGTGAGGTGTGCAGA------GT??????????????????????????????????????????????????????????????????CCTCACATGGAGTCTGCTC-TTGTTGCAAATTTCT-CTCTCGAAATGAC-CTGATTC-----TTA-TTCCT----GATCTTGA----TAGGTAT-CAAGTGCGGTCGAGC----------ATTTGATGTT---GAGTTGCGAAGAGAATTTAGATACAA
OTM2b_Palau  ATTACCGT--AC-----------------------------------------------------------------------CGTACTGTAT-----------------------------------------CGTA-CT-GCT-----------------------------------------GCTGCTATT-----CTGTTGAGCGACTGATTCC------------------------------------------ACATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACCTGTACCCATCTGTGTGAGGTGTGCAGA------GTGCACACGAGTAGCTAGTGT--GTACGTCTGCCCTTAAATGACTGGCGTTTT-------CCAGTCGGCCTCACATGGAGTCTGCTC-TTGTTGCAAATTTCT-CTCTCGAAATGAC-CTGATTC-----TTA-TTCCT----GATCTTGA----TAGGTAT-CAAGTGCGGTCGAGC----------ATTTGATGTT---GAGTTGCGAAGAGAATTTAGATACAA
OTM3a_Palau  ATTACCGT--AC-----------------------------------------------------------------------CGTACTGTAT-----------------------------------------CGTA-CT-GCT-----------------------------------------GCTGCTATT-----CTGTTGAGCGACTGATTCC------------------------------------------ACATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACCTGTACCCATCTGTGTGAGGTGTGCAGA------GTGCACACGAGTAGCTAGTGT--GTACGTCTGCCCTTAAATGACTGGCGTTTT-------CCAGTCGGCCTCACATGGAGTCTGCTC-TTGTTGCAAATTTCT-CTCTCGAAATGAC-CTGATTC-----TTA-TTCCT----GATCTTGA----TAGATAT-CAAGTGCGGTCGAGC----------ATTTGATGTT---GAGTTGCGAAGAGAATTTAGATACAA
BJLK1abcd_   ATTACCGT--AC-----------------------------------------------------------------------CGTACTGTAT-----------------------------------------CGTA-CT-GCT-----------------------------------------GCTGCTATT-----CTGTTGAGCGACTGATTCC------------------------------------------ACATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACCTGTACCCATCTGTGTGAGGTGTGCAGA------GTGCACACGAGTAGCTAGTGT--GTACGTCTGCCCTTAAATGACCGGCGTTTT-------CCAGTCGGCCTCACATGGAGTCTGCTC-TTGTTGCAAATTTCT-CTCTCGAAATGAC-CTGATTC-----TTA-TTCCT----GATCTTGA----TAGATAT-CAAGTGCGGTCGAGC----------ATTTGATGTT---GAGTTGCGAAGAGAATTTAGATACAA
BJLK5a_Palau ATTACCGT--AC-----------------------------------------------------------------------CGTACTGTAT-----------------------------------------CGTA-CT-GCT-----------------------------------------GCTGCTATT-----CTGTTGAGCGACTGATTCC------------------------------------------ACATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACCTGTACCCATCTGTGTGAGGTGTGCAGA------GTGCACACGAGTAGCTAGTGT--GTACGTCTGCCCTTAAATGACNGGCGTTTT-------CCAGTCTGCCTCACATGGAGTCTGCTC-TTGTTGCAAATTTCT-CTCTCGAAATGAC-CTGATTC-----TTA-TTCCT----GATCTTGA----TAGATAT-CAAGTGCGGTCGAGC----------ATTTGATGTT---GAGTTGCGAAGAGAATTTAGATACAA
HLEM1ab_Pala ATTACCGT--AC-----------------------------------------------------------------------CGTACTGTAT-----------------------------------------CGTA-CT-GCT-----------------------------------------GCTGCTATT-----CTGTTGAGCGACTGATTCC------------------------------------------ACATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACCTGTACCCATCTGTGTGAGGTGTGCAGA------GT??????????????????????????????????????????????????????????????????CCTCACATGGAGTCTGCTC-TTGTTGCAAATTTCT-CTCTCGAAATGAC-CTGATTC-----TTA-TTCCT----GATCTTGA----TAGATAT-CAAGTGCGGTCGAGC----------ATTTGATGTT---GAGTTGCGAAGAGAATTTAGATACAA
Ongael28ab   ATTACCGT--AC-----------------------------------------------------------------------CGTACTGTAT-----------------------------------------CGTA-CT-GCT-----------------------------------------GCTGCTATT-----CTGTTGAGCGACTGATTCC------------------------------------------ACATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACCTGTACCCATCTGTGTGAGGTGTGCAGA------GTGCACACGAGTAGCTAGTGT--GTACGTCTGCCCTTAAATGACTGGCGTTTT-------CCAGTCGGCCTCACATGGAGTCTGCTC-TTGTTGCAAATTTCT-CTCTCGAAATGAC-CTGATTC-----TTA-TTCCT----GATCTTGA----TAGATAT-CAAGTGCGGTCGAGC----------ATTTGATGTT---GAGTTGCGAAGAGAATTTAGATACAA
TKCU13A      ATTACCGT--AC------------------------------------------------------------------CGTACCGTACAGTATGTAGTGCTAACTTGC---CTACTTA----------------C-TG-CTTACT-----------------------------------------GCTGCTATT-----CTGTTGAGCGAATGAATGC------------------------------------------TCATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGTGCAGA------GTGCACAC------CGAGTGT--GTACGTCTGTGCTTAAATGACTGGCGCTCT-------CCAGTCGGCCTCACATGGAGTTTGCTC-CTGTTGCAAATTTTT-CTCTCGAAATGAC-ATTATTGCTA--TTA-TTCCT----GATGATGAGAATCAAGTAT-TGAGTAAGACTTACTT---------ACTTGTTTCT---GAGTTGCGAAGAAAAATTAGATACAA
TKCU13B      ATTACCGT--AC-----------------------------------------------------------------------CGTACAGTATGTAGTGCCAACTTGC---CTACTTA----------------C-TA-CTTACT-----------------------------------------GCTGCTATT-----CTGTTGAGCGAATGAATGC------------------------------------------TCATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGTGCAGA------GTGCACAC-------GAGTGT--GTAGGTCTGTGCTTAAATGACTGGCGCTCT-------CCAGTCGGCCTCACATGGAGTTTGCTC-CTGTTGCAAATTTTTTCTCTCGAAATGAC-ATTATTGCTA--TTA-TTCCT----GATGATGAGAATCAAGTAT-TGAGTAAGACTTACTT---------ACTTGTTTCT---GAGTTGCGAAGAGAAATTAGATACAA
TKCU12aPalau ATTACCGT--AC-----------------------------------------------------------------------CGTACAGTATGTAGTGCCAACTTGC---CTACTTA----------------C-TA-CTTACT-----------------------------------------GCCGCTATT-----CTGTTGAGCGAATGAATGC------------------------------------------TCATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGTGCAGA------GTGCACAC-------GAGTGT--GTAGGTCTGTGCTTAAATGACTGGCGCTCT-------CCAGTCGGCCTCACATGGAGTTTGCTC-CTGTTGCAAATTTTTTCTCTCGAAATGAC-ATTATTGCTA--TTA-TTCCT----GATGATGAGAATCAAGTAT-TGAGTAAGACTTACTT---------ACTTGGTTCT---GAGTTGCGAAGAAAAATTAGATACAA
TKCU12bPalau ATTACCGT--AC-----------------------------------------------------------------------CGTACAGTATGTAGTGCTAACTTGC---CTACTTA----------------C-TG-CTTACT-----------------------------------------GCTGCTATT-----CTGTTGAGCGAATGAATGC------------------------------------------TCATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGTGCAGA------GTGCACAC-------GAGTGT--GTACGTCTGTGCTTAAATGACTGGCGCTCT-------CCAGTCGGCCTCACATGGAGTTTGCTC-CTGTTGCAAATTTTTTCTCTCGAAATGAC-ATTATTGCTA--TTA-TTCCT----GATCATGAGAATCAAGTAT-TGAGTGAGACTTACTT---------ACTTGTTTCT---GAGTTGCGAAGAGAAATTAGATACAA
CRRF48aPalau ATTACCGT--AC------------------------------------------------------------------CGTACCGTACAGTATGTAGTGCTAACTTGC---CTACTTA----------------C-TG-CTTACT-----------------------------------------GCTGCTATT-----CTGTTGAGCGAATGAATGC------------------------------------------TCATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGTGCAGA------GTGCACAC-------GAGTGT--GTACGTCTGTGCTTAAATGACTGGCGCTCT-------CCAGTCGGCCTCACATGGAGTTTGCTC-CTGTTGCAAATTTTTTCTCTCGAAATGAC-ATTATTGCTA--TTA-TTCCT----GATCATGAGAATCAAGTAT-TGAGTGAGACTTACTT---------ACTTGTTTCT---GAGTTGCGAAGAGAAATTAGATACAA
CRRF48bPalau ATTACCGT--AC-----------------------------------------------------------------------CGTACAGTATGTAGTGCCAACTTGC---CTACTTA----------------C-TA-CTTACT-----------------------------------------GCTGCTATT-----CTGTTGAGCGAATGAATGC------------------------------------------TCATCATTCGACAACGAATAAC-AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGTGCAGA------GTGCACAC-------GAGTGT--GTACGTCTGTGCTTAAATGACTGGCGCTCT-------CCAGTCGGCCTCACATGGAGTTTGCTC-CTGTTGCAAATTTTTTCTCTCGAAATGAC-ATTATTGCTA--TTA-TTCCT----GATCATGAGAATCAAGTAT-TGAGTGAGACTTACTT---------ACTTGTTTCT---GAGTTGCGAAGAGAAATTAGATACAA
TketauLM35   ATTACCGT--AC-----------------------------------------------------------------------CGTACAGTATGTAGTGCCAACTTGC---CTACTTA----------------C-TA-CTTACT-----------------------------------------GCTGCTATT-----CTGTTGAGCGAATGAATGC------------------------------------------TCATCATTCGACAACGAATAAC-AACAACC--------?CTGTGAACTTGTACCAATCTGTGTGAGGTGTGCAGA------GTGCACAC-------GAGTGT--GTACGTCTGTGCTTAAATGACTGGCGCTCT-------CCAGTCGGCCTCACATGGAGTTTGCTC-CTGTTGCAAATTTTTTCTCTCGAAATGAC-ATTATTGCTA--TTA-TTCCT----GATGATGAGAATCAAGTAT-TGAGTAAGACTTACTT---------ACTTGTTTCT---GAGTTGCGAAGAAAAATTAGATACAA
Ngell45A     ATTACCGT--ATG-------------------------------------------------------------------------------------CCTATGTTA--GTGCATTTTTGA-------------C-TAACTAGTT-------------------------------------------TGCTATT-----CTGTTGAGCGAATTTTTTTG----------------------------------------AAAAACATTCGACAACGAATAAC-AACAACC--------ACTGTGAACTCGTACCAATCTGTGTGAGGTGTGCAGA------GTGCACAC-------GCGTGC--GTACGTCTGTGCTTAAATGACCGGCGTTTT-------CCAGTCGGCCTCACATGGAGTTTGCTC-TTGTTGCAAATTTTT-----CCAAATGAC-TT-ATTATCA--TTA-TTCCT----GATCGTAA------------TAATTGAACTCAAGA----------GTTCGAT-TA---AAGTGTAGTAGAAAAATGAGATACAA
HELEN3A      ATTACCGT--ATG-------------------------------------------------------------------------------------CTTGTGTTA--GTGCATTTTTGA-------------C-TAACTAGTT-------------------------------------------TGCTATT-----CTGTTGAGCGAAGTTTTTTG----------------------------------------AAAAACATTCGACAACGAATAAC-AACAACC--------ACTGTGAACTCGTACCAATCTGTGTGAGGTGTGCAGA------GTGCACAC-------GCGTGT--GTACGTCTGTGCTTAAATGACCGGCGTTTT-------CCAGTCGGCCTCACATGGAGTTTGCTC-TTGTTGCAAATTTTT-----CGAAATGAC-TT-ATTATGA--TTA-TTCCT----GATCGTTA------------TAATTGAACTCAAGA----------GTTCGAT-TA---AAGTGTAGTAGAAAAATGAGATACAA
bHelenReef   ATTACCGT--ATG-------------------------------------------------------------------------------------CTTATGTTA--GTGCATTTTTGA-------------C-TAACTAGTT-------------------------------------------TGCTATT-----CTGTTGAGCGAATTTTTTTG----------------------------------------AAAAACTTTCGACAACGAATAAC-AACAACC--------ACTGTGAACTCGTACCAATCTGTGTGAGGTGTGCAGA------GTGCACAC-------GCGTGT--GTACGTCTGTGCTTAAATGACTGGCGTTTT-------CTAGTCGGCCTCACATGGAGTTTGCTC-TTGTTGCAAATTTTT-----CCAAGTGAC-TTTATTTCCAAATTA-TTCCT----GATCATAA------------TAATTGAACTCAAGA----------GTTCGAT-TA---AAGTGTAGTAGAAAAATGAGATACAA
R_1WhiteSea  ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTTTTGTTT----ACTAT-----TATAAAAAC--TTAA---ACATTTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
7EBlackSea   ????CCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAAAACAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
Boston3a_Ma  ATTACCGA--AT-----------------------------------------------------------------------------------CTACCACTGTTAT------GTTG-AT-------------CATAACT--------------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAATTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCATATGGAGCTTGCTTATTGTTT----ACTAT-----TATAAATAC--TTAT---AAATTTT-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
Boston3b_Ma  ATTACCGA--AT-----------------------------------------------------------------------------------CTACCACTGTTAT-GTT-----G-AT-------------CATAACT--------------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------GCTGTGAATTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCATATGGAGCTTGCTTATTGTTT----ACTAT-----TATAAATAC--TTAT---AAATTTT-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
25Charlest   ATTACCGA--AT-----------------------------------------------------------------------------------CTACCACTGTTAT-GTT-----G-AT-------------CATAACT--------------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAATTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCATATGGAGCTTGCTTATTGTTT----ACTAT-----TATAAATAC--TTAT---AAATTTT-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
26Charlest   ATTACCGA--AT-----------------------------------------------------------------------------------CTACCACTGTTAT-GTT-----G-AT-------------CATAACT--------------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAATTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCATATGGAGCTTGCTTATTGTTT----ACTAT-----TATAAATAC--TTAT---AAATTTT-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
Boston1_Ma   ATTACCGA--AT-----------------------------------------------------------------------------------CTACCACTGTTAT-GTT-----G-AT-------------CATAACT--------------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAATTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCATATGGAGCTTGCTTATTGTTT----ACTAT-----TATAAATAC--TTAT---AAATTTT-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
Boston2_Ma   ATTACCGA--AT-----------------------------------------------------------------------------------CTACCACTGTTAT-GTT-----G-AT-------------CATAACT--------------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAATTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCATATGGAGCTTGCTTATTGTTT----ACTAT-----TATAAATAC--TTAT---AAATTTT-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
dBosporus1   ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACAGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTTTTGTTT----ACTAT-----TATAAAAAC--TTAA---ACATTTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
bBosphorus   ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
cBosphorus   ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CGTTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
1WhiteSea    ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ATTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
5WhiteSea    ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTTTTGTTT----ACTAT-----TATAAAAAC--TTAA---ACATTTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
6WhiteSea    ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
7_1EBlackSea ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
7_3EBlackSea ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
8EBlackSea   ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAAGAACTCGGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAAAAAC--TTAA---ACATTTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
15_1Gullmar  ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
15_2Gullmar  ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
15_3Gullmar  ?TTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
16Gullmar    ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTACT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
17Gullmar    ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGCGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAATATGAAATACAA
29Greenwic   ATTACCGA--AT-----------------------------------------------------------------------------------CTACCACTGTTAT-GTT-----G-AT-------------CATAACT--------------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAATTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCATATGGAGCTTGCTTATTGTTT----ACTAT-----TATAAATAC--TTAT---AAATTTT-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
29_1Greenwic ATTACCGA--AT-----------------------------------------------------------------------------------CTACCACTGTTAT-GTT-----G-AT-------------CATAACT--------------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAATTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCATATGGAGCTTGCTTATTGTTT----ACTAT-----TATAAATAC--TTAT---AAATTTT-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
30Greenwic   ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
24Charlest   ATTACCGA--AT-----------------------------------------------------------------------------------CTACCACTGTTAT-GTT-----G-AT-------------CATAACT--------------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAATTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTT----------------------------------------------ACTAT-----TATAAATAC--TTAT---AAATTTT-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
24_1Charlest ATTACCGA--AT-----------------------------------------------------------------------------------CTACCACTGTTAT-GTT-----G-AT-------------CATAACT--------------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAATTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTT----------------------------------------------ACTAT-----TATAAATAC--TTAT---AAATTTT-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
24_3Charlest ATTACCGA--AT-----------------------------------------------------------------------------------CTACCACTGTTAT-GTT-----G-AT-------------CATAACT--------------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCGGC-ACGAAT----AACAACC--------ACTGTGAATTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTT----------------------------------------------ACTAT-----TATAAATAC--TTAT---AAATTTT-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
18Bjornsun   ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
18_1Bjornsun ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
18_2Bjornsun ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
19Bjornsun   ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTCG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAACATGTTAAAAATGAAATACAA
20Bjornsun   ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAA--CAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT-----CTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
22Bjornsun   ATTACCGA--AT-----------------------------------------------------------------------------------CTAC---TGTTAT-GTT--GTTG-GT-CTCG--ACTGA-CACAAAAACAAAT--------------------------------------CGCTGCTATT-----CTGTTGAGC----------------------------------------------------TAACAACTCAGC-ACGAAT----AACAACC--------ACTGTGAACTTGTACCAATCTGTGTGAGGTGGGCAGA------GTATACAT-------GCGTGT--GTACGTCTGTGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGCTTGCTTATTGTTT----ACTAT-----TATAACAAC--TTAT---AAAATTA-TTCCT----GA----A---------AAT-TTATTGTGTTATT-----------CATTTAGCGCA---ATGAAGATGTTAAAAATGAAATACAA
9_4SaoPaulo  ATTACCG---ATG------------------------CGAGGCGAGACGAGGCGCGACAGCCCAGCCCAAGCGGTGGG--------------------------------------------------------------------------------------------------------------------------ATGT----CGG---------TCAGTCAGTCAGCCAACAGCAGCCCGGCCCGGCCCGGCCC------ACTCGAT-GCTAGT---GAGCAGCCGCTGCGCAACTGTGAACCTGTACTGATCTGTGTGAGGTGGGCAGGTGATTCGTCGAGACGGCT----CGATTCGATTCGCCTGCTCTTAAATGACAGCCAGCCTGACTGCGCTTGTCGGCCTCACATGGAGTTTGTTTGCTCCCGTGATGTTTT-----TACTACTATGTCTGTCGGAGTGCTG-CTACTTAATGGTGGTAC------CACACACGAGTGTGTTGTG-----------TGTGTGTGATA----CGTGATGGGAATATACGAGAGACAA
10SaoPaulo   ATTACCG---ATG------------------------CGAGGCGAGACGAGGCGCGACAGCCCAGCCCAAGCGGTGGG--------------------------------------------------------------------------------------------------------------------------ACGT----CGG---------TCAGTCAGTCAGCCAACAGCAGCCCGGCCCGGCCC-----------ACTCGAT-GCTAGT---GAGCAGCCGCTGCGCAACTGTGAACCTGTACTGATCTGTGTGAGGTGGGCAGGTGATTCGTCGAGACGGCT----CGTTTCGATTCGCCTGCTCTTGAATGACAGCCAGCCTGACTGCGCTTGTCGGCCTCACATGGAGTTTGTTTGCTCCCGTGATGTTTT-----TACTACTACGTCTGTCGGAGTGCTG-CTACTTAATGGTGGTAC------CACACACGAGTGTGTTGTG-----------TGTGTGTGATA----CGTGATGGGAATATACGAGAGACAA
9SaoPaulo    ATTACCG---ATG------------------------CGAGGCGAGACGAGGCGCGACAGCCCAGCCCAAGCGGTGGG--------------------------------------------------------------------------------------------------------------------------ACGT----CGG---------TCAGTCAGTCAGCCAACAGCAGCCCGGCCCGGCCC-----------ACTCGAT-GCTAGT---GAGCAGCCGCTGCGCAACTGTGAACCTGTGCTGATCTGTGTGAGGTGGGCAGGTGATTCGTCAAGACGGCT----CGTTTCGATTCGCCTGCTCTTAAATGACAGCCAGCCTGACTGCGCTTGTCGGCCTCACATGGAGTTTGTTTGCTCCCGTGATGTTTT-----TACTACTACGTCTGTCGGAGTGCTG-CTACTTAATGGTGGTAC------CACACACGAGTGTGTTGTG-----------TGTGTG--ATA----CGTGATGGGAATATACGAGAGACAA
9_1SaoPaulo  ATTACCG---ATG------------------------CGAGGCGAGACGAGGCGCGACAGCCCAGCCCAAGCGGTGGG--------------------------------------------------------------------------------------------------------------------------ATGT----CGG---------TCAGTCAGTCAGCCAACAGCAGCCCGGCCCGGCCCGGCCC------ACTCGAT-GCTAGT---GAGCAGCCGCTGCGCAACTGTGAACCTGTACTGATCTGTGTGAGGTGGGCAGGTGATTCGTCGAGACGGCT----CGATTCGATTCGCCTGCTCTTAAATGACAGCCAGCCTGACTGCGCTTGTCGGCCTCACATGGAGTTTGTTTGCTCCCGTGATGTTTT-----TACTACTATGTCTGTCGGAGTGCTG-CTACTTAATGGTGGTAC------CACACACGAGTGTGTTGTG-----------TGTGTGTGATA----CGTGATGGGAATATACGAGAGACAA
9_2SaoPaulo  ATTACCG---ATG------------------------CGAGGCGAGACGAGGCGCGACAGCCCAGCCCAAGCGGTGGG--------------------------------------------------------------------------------------------------------------------------ACGT----CGG---------TCAGTCAGTCAGCCAACAGCAGCCCGGCCCGGCCC-----------ACTCGAT-GCTAGT---GAGCAGCCGCTGCGCAACTGTGAACCTGTACTGATCTGTGTGAGGTGGGCAGGTGATTCGTCAAGACGGCT----CGTTTCGATTCGCCTGCTCTTAAATGACAGCCAGCCTGACTGCGCTTGTCGGCCTCACATGGAGTTTGTTTGCTCCCGTGATGTTTT-----TACTACTACGTCTGTCGGAGTGCTG-CTACTTAATGGTGGTAC------CACACACGAGTGTGTTGTG-----------TGTGTG--ATA----CGTGATGGGAATATACGAGAGACAA
9_3SaoPaulo  ?TTACCG---ATG------------------------CGAGGCGAGACGAGGCGCGACAGCC-AGCCCAAGCGGTGG---------------------------------------------------------------------------------------------------------------------------ACGT----CGG---------TCAGTCAGTCAGCCAACAGCAGCCCGGCCCGGCCC-----------ACTCGAT-GCTAGT---GAGCAGCCGCTGCGCAACTGTGAACCTGTACTGATCTGTGTGAGGTGGGCAGGTGATTCGTCAAGACGGCT----CGTTTCGATTCGCCTGCTCTTAAATGACAGCCAGCCTGACTGCGCTTGTCGGCCTCACATGGAGTTTGTTTGCTCCCGTGATGTTTT-----TACTACTACGTCTGTCGGAGTGCTG-CTACTTAATGGTGGTAC------CACACACGAGTGTGTTGTG-----------TGTGTG--ATA----CGTGATGGGAATATACGAGAGACAA
11SaoPaulo   ????????????????????????????????????????????????GAGGCGCGACAGCCCAGCCCAAGCGGTGGG--------------------------------------------------------------------------------------------------------------------------ATGT----CGG-----TCGGTCAGTCAGTCAGCCAACAGCAGCCCGGCCCGGCCCGGCCC------ACTCGAT-GCTAGT---GAGCAGCCGCTGCGCAACTGTGAACCTGTACTGATCTGTGTGAGGTGGGCAGGTGATTCGTCGAGACGGCT----CGATTCGATTCGCCTGCTCTTAAATGACAGCCAGCCTGACTGCGCTTGTCGGCCTCACATGGAGTTTGTTTGCTCCCGTGATGTTTT-----TACTACTACGTCTGTCGGAGTGCTG-CTACTTAATGGTGGTAC------CACACACGAGTGTGTTGTG-----------TGTGTGTGATA----CGTGATGGGAATATACGAGAGACAA
12SaoPaulo   ATTACCG---ATG------------------------CGAGGCGAGACGAGGCGCGACAGCCCAGCCCAAGCGGTGGG--------------------------------------------------------------------------------------------------------------------------ACGT----CGG---------TCAGTCAGTCAGCCAACAGCAGCCCGGCCCGGCCC-----------ACTCGAT-GCTAGT---GAGCAGCCGCTGCGCAACTGTGAACCTGTACTGATCTGTGTGAGGTGGGCAGGTGATTCGTCAAGACGGCT----CGTTTCGATTCGCCTGCTCTTAAATGACAGCCAGCCTGACTGCGCTTGTCGGCCTCACATGGAGTTTGTTTGCTCCCGTGATGTTTT-----TACTACTACGTCTGTCGGAGTGCTG-CTACTTAATGGTGGTAC------CACACACGAGTGTGTTGTG-----------TGTGTGTGATA----CGTGATGGGAATATACGAGAGACAA
1_5Mljet     ?TTACCGAAAAGGA---------------------------------------------------------------------------------TCATTATCATT---ATTAACTTA-----------GTGATAATAAA------------------------------------------------TTTTATT-----CTGTTGT------------------------------------------------------------TTCGACAACGAACGAATAATA-TC--------ACTGTGAACTTGTACCGATCTGTGTGAGGTGGGTAGA------GTGCACAT-------GCGTGT--GTACGTCTATGCTTAAATGACGGGCGTTCT-------CCCATCGGCCTCACATGGAGTTTGCTTGC-GTTCGTTTATTTT-----CATTAC-AC--TTGCTTGATAATTA-TTCCA----GACTATAG------GTAAT-CGAACGTGCTTTT---TAG---TGTGTTTGGT-TATTTATAAAGTAGA-AAAAATGAGATACAA
2Benovic     ATTACCGAAAAGGA---------------------------------------------------------------------------------TCATTATCATT---ATTAACTTA-----------ATGATAAAAGA------------------------------------------------TTTTATT-----CTGTTGT------------------------------------------------------------TTCGACAACGAACGAATAATA-TC--------ACTGTGAACTTGTACCGATCTGTGTGAGGTGGGTAGA------GTGCACAT-------GCGTGT--GTACGTCTATGCTTAAATGACGGGCGTTCT-------CCCATCGGCCTCACATGGAGTTTGCTTGT-GTTCGTTTATTTT-----CATTAC-AC--TTGCTTGATAATTA-TTCCA----GACTATAG------GTAAT-CGAACGTGCTTTT---TAG---TGTGTTTGGT-TATTTATAAAGTAGA-AAAAATGAGATACAA
1_1Mljet     ?TTACCGAAAAGGA---------------------------------------------------------------------------------TCATTATCATT---ATTAACTTA-----------GTGATAATAAA------------------------------------------------TTTTATT-----CTGTTGT------------------------------------------------------------TTCGACAACGAACGAATAATA-TC--------ACTGTGAACTTGTACCGATCTGTGTGAGGTGGGTAGA------GTGCACAT-------GCGTGT--GTACGTCTATGCTTAAATGACGGGCGTTCT-------CCCATCGGCCTCACATGGAGTTTGCTTGT-GTTCGTTTATTTT-----CATTAC-AC--TTGCTTGATAATTA-TTCCA----GACTATAG------GTAAT-CGAACGTGCTTTT---TAG---TGTGTTTGGT-TATTTATAAAGTAGA-AAAAATGAGATACAA
1_2Mljet     ATTACCGAAAAGGA---------------------------------------------------------------------------------TCATTATCATT---ATTAACTTA-----------ATGATAAAAGA------------------------------------------------TTTTATT-----CTGTTGT------------------------------------------------------------TTCGACAACGAACGAATAATA-TC--------ACTGTGAACTTGTACCGATCTGTGTGAGGTGGGTAGA------GTGCACAT-------GCGTGT--GTACGTCTATGCTTAAATGACGGGCGTTCT-------CCCATCGGCCTCACATGGAGTTTGCTTGT-GTTCGTTTATTTT-----CATTAC-AC--TTGCTTGATAATTA-TTCCA----GACTATAG------GTAAT-CGAACGTGCTTTT---TAG---TGTGTTTGGT-TATTTATAAAGTAGA-AAAAATGAGATACAA
1_3Mljet     ATTACCGAAAAGGA---------------------------------------------------------------------------------TCATTATCATT---ATTAACTTA-----------ATGATAAAAGA------------------------------------------------TTTTATT-----CTGTTGT------------------------------------------------------------TTCGACAACGAACGAATAATA-TC--------ACTGTGAACTTGTACCGATCTGTGTGAGGTGGGTAGA------GTGCACAT-------GCGTGT--GTACGTCTATGCTTAAATGACGGGCGTTCT-------CCCATCGGCCTCACATGGAGTTTGCTTGT-GTTCGTTTATTTT-----CATTAC-AC--TTGCTTGATAATTA-TTCCA----GACTATAG------GTAAT-CGAACGTGCTTTT---TAG---TGTGTTTGGT-TATTTATAAAGTAGA-AAAAATGAGATACAA
1_4Mljet     ?TTACCGAAAAGGA---------------------------------------------------------------------------------TCATTATCATT---ATTAACTTA-----------ATGATAAAAGA------------------------------------------------TTTTATT-----CTGTTGT------------------------------------------------------------TTCGACAACGAACGAATAATA-TC--------ACTGTGAACTTGTACCGATCTGTGTGAGGTGGGTAGA------GTGCACAT-------GCGTGT--GTACGTCTATGCTTAAATGACGGGCGTTCT-------CCCATCGGCCTCACATGGAGTTTGCTTGT-GTTCGTTTATTTT-----CATTAC-AC--TTG----ATAATTA-TTCCA----GACTATAG------GTAAT-CGAACGTGCTTTT---TAG---TGTGTTTGGT-TATTTATAAAGTTGA-AAAAATGAGATACAA
3Mljet       ATTACCGAAAAGGA---------------------------------------------------------------------------------TCATTATCATT---ATTAACTTA-----------GTGATAATAAA------------------------------------------------TTTTATT-----CTGTTGT------------------------------------------------------------TTCGACAACGAACGAATAATA-TC--------ACTGTGAACTTGTACCGATCTGTGTGAGGTGGGTAGA------GTGCACAT-------GCGTGT--GTACGTCTATGCTTAAATGACGGGCGTTCT-------CCCATCGGCCTCACATGGAGTTTGCTTGT-GTTCGTTTATTTT-----CATTAC-AC--TTG----ATAATTA-TTCCA----GACTATAG------GTAAT-CGAACGTGCTTTT---TAG---TGTGTTTGGT-TATTTATAAAGTTGA-AAAAATGAGATACAA
4Mljet       ?TTACCGAAAAGGA---------------------------------------------------------------------------------TCATTATCATT---ATTAACTTA-----------GTGATAATAAA------------------------------------------------TTTTATT-----CTGTTGT------------------------------------------------------------TTCGACAACGAACGAATAATA-TC--------ACTGTGAACTTGTACCGATCTGTGTGAGGTGGGTAGA------GTGCACAT-------GCGTGT--GTACGTCTATGCTTAAATGACGGGCGTTCT-------CCCATCGGCCTCACATGGAGTTTGCTTGT-GTTCGTTTATTTT-----CATTAC-AC--TTGCTTGATAATTA-TTCCA----GACTATAG------GTAAT-CGAACGTGCTTTT---TAG---TGTGTTTGGT-TATTTATAAAGTTGA-AAAAATGAGATACAA
5Mljet       ATTACCGAAAAGGA---------------------------------------------------------------------------------TCATTATCATT---ATTAACTTA-----------ATGATAAAAGA------------------------------------------------TTTTATT-----CTGTTGT------------------------------------------------------------TTCGACAACGAACGAATAATA-TC--------ACTGTGAACTTGTACCGATCTGTGTGAGGTGGGTAGA------GTGCACAT-------GCGTGT--GTACGTCTATGCTTAAATGACGGGCGTTTT-------CCCATCGGCCTCACATGGAGTTTGCTTGT-GTTCGTTTATTTT-----CATTAC-AC--TTGAT-AATAATTA-TTCCA----GACTATAG------GTAAT-CGAACGTGCTTTT---TAG---TGTGTTTGGT-TATTTATAAAGTAGA-AAAAATGAGATACAA
6Mljet       ATTACCGAAAAGGA---------------------------------------------------------------------------------TCATTATCATT---ATTAACTTA-----------ATGATAAAAGA------------------------------------------------TTTTATT-----CTGTTGT------------------------------------------------------------TTCGACAACGAACGAATAATA-TC--------ACTGTGAACTTGTACCGATCTGTGTGAGGTGGGTAGA------GTGCACAT-------GCGTGT--GTACGTCTATGCTTAAATGACGGGCGTTCT-------CCCATCGGCCTCACATGGAGTTTGCTTGT-GTTCGTTTATTTT-----CATTAC-AC--TTGCTTGATAATTA-TTCCA----GACTATAG------GTAAT-CGAACGTGCTTTT---TAG---TGTGTTTGGT-TATTTATAAAGTAGA-AAAAATGAGATACAA
	;
End;

Begin assumptions;

charset exclude = 13-78 148-184 221-261;

[usertype ti_tv stepmatrix = 4
     G  A  T  C    
[G]  0  1  2  2    
[A]  1  0  2  2    
[T]  2  2  0  1    
[C]  2  2  1  0    
]

;end;